A factor analysis system and method thereof is disclosed. The factor analysis system comprises a data receiving module for receiving a plurality of factors having influence on a target total value, a plurality of base values corresponding to the factors, and a target improvement percentage; a first computing unit for computing a reference target total value and a plurality of upgraded target total values; a second computing unit using the upgraded target total values and the reference target total value to compute the sensitivity of each of the factors; and a processing module for multiplying a factor improvement of each factor in percentage point by the factor sensitivity of each factor to obtain the level of contribution of each factor to the target total value. Through the factor analysis, a decision maker can decide the optimal combination of different factor improvements for achieving the planned target total value. |